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Dual Specificity Phosphatases: From Molecular Mechanisms to Biological Function

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ISBN: 9783039216888 9783039216895 Year: Pages: 240 DOI: 10.3390/books978-3-03921-689-5 Language: English
Publisher: MDPI - Multidisciplinary Digital Publishing Institute
Subject: Science (General) --- Biology
Added to DOAB on : 2019-12-09 11:49:16
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Dual specificity phosphatases (DUSPs) constitute a heterogeneous group of protein tyrosine phosphatases with the ability to dephosphorylate Ser/Thr and Tyr residues from proteins, as well as from other non-proteinaceous substrates including signaling lipids. DUSPs include, among others, MAP kinase (MAPK) phosphatases (MKPs) and small-size atypical DUSPs. MKPs are enzymes specialized in regulating the activity and subcellular location of MAPKs, whereas the function of small-size atypical DUSPs seems to be more diverse. DUSPs have emerged as key players in the regulation of cell growth, differentiation, stress response, and apoptosis. DUSPs regulate essential physiological processes, including immunity, neurobiology and metabolic homeostasis, and have been implicated in tumorigenesis, pathological inflammation and metabolic disorders. Accordingly, alterations in the expression or function of MKPs and small-size atypical DUSPs have consequences essential to human disease, making these enzymes potential biological markers and therapeutic targets. This Special Issue covers recent advances in the molecular mechanisms and biological functions of MKPs and small-size atypical DUSPs, and their relevance in human disease.

Neuroproteomics

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ISBN: 9783039281060 9783039281077 Year: Pages: 318 DOI: 10.3390/books978-3-03928-107-7 Language: English
Publisher: MDPI - Multidisciplinary Digital Publishing Institute
Subject: Medicine (General) --- Neurology
Added to DOAB on : 2020-04-07 23:07:08
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The Neuroproteomics Special Issue overviews the unique challenges that must be addressed to carry out meaningful MS/proteomics analyses on neural tissues and the technologies that are available to meet these challenges. The articles on Alzheimer’s disease, addiction, and schizophrenia illustrate how MS/proteomics technologies can be used to improve our ability to diagnose and understand the molecular basis for neurological diseases. Several articles will be of interest to investigators beyond the field of neurological disorders. The review on the discovery of biofluid biomarkers of neurodegenerative dementias will be of interest to investigators searching for other disease biomarkers. Similarly, the review on the role of neuroproteomics in elucidating mechanisms of drug addiction provides an overview of the utility of MS/proteomics approaches for addressing critical questions in addiction neuroscience that should be applicable to investigators involved in virtually any area of biomedical research. Likewise, the article on developing targeted MS approaches for quantifying postsynaptic density proteins will be useful for any investigator who wishes to design targeted assays for virtually any protein. Finally, the peroxidase-mediated proximity labeling technology, described in the article on mapping the proteome of the synaptic cleft, will be of interest to investigators interested in mapping other spatially restricted proteomes.

Keywords

proteomics --- basal ganglia --- synapses --- synapse specificity --- neuronal circuits --- axons --- dendrites --- neurodegeneration --- synapse --- postsynaptic --- proteome --- mass spectrometry --- protein interaction networks --- connectome --- neurodegeneration --- Alzheimer’s disease --- cerebrospinal fluid --- plasma --- serum --- proteomics --- biomarkers --- LC-MS/MS --- cocaine --- addiction --- cytokine --- neuroimmune --- ventral tegmental area --- peptidylglycine ?-amidating monooxygenase --- cilia --- mating --- signal peptide --- prohormone convertase --- carboxypeptidase --- matrix metalloproteinase --- subtilisin --- pherophorin --- morphine --- opioid receptors --- conformational antibody --- analgesia --- GPCR signaling --- phosphorylation --- AMPA receptor complex --- transmembrane AMPA receptor regulatory protein --- synaptic plasticity --- adolescence --- corticosterone --- proteomics --- yohimbine --- progressive ratio --- reinstatement --- ethanol --- nicotinic receptor --- CaMKII --- PKA --- quantitative phosphoproteomics --- mouse --- phosphorylation --- nicotine --- proteomics --- proteome --- mass spectrometry --- Alzheimer’s disease --- protein aggregation --- laser capture microdissection --- splicing --- U1 snRNP --- synapse --- synaptic cleft --- trans-synaptic adhesion --- proximity labeling --- SynCAM --- Cadm --- Receptor-type tyrosine-protein phosphatase zeta --- R-PTP-zeta --- Ptprz1 --- neuroproteome --- drug abuse --- neuropeptidomics --- phosphorylation --- interactome --- cell type --- neuroscience --- proteomics --- mass spectrometry --- neuron --- proximity labeling --- affinity chromatography --- neuroproteomics --- biotinylation --- amphetamine --- spinophilin --- protein phosphatase-1 --- dopamine --- striatum --- mass spectroscopy --- bioinformatics --- FGF14 --- voltage gated channels --- schizophrenia --- autism --- Alzheimer’s Disease --- sex-specific differences --- synaptic plasticity --- cognitive impairment --- excitatory/inhibitory tone --- n/a --- postsynaptic density --- PSD --- parallel reaction monitoring --- PRM --- targeted proteomics --- data-independent acquisition --- DIA --- quantitative mass spectrometry --- n/a

Characterization of Bioactive Components in Edible Algae

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ISBN: 9783039285600 / 9783039285617 Year: Pages: 226 DOI: 10.3390/books978-3-03928-561-7 Language: eng
Publisher: MDPI - Multidisciplinary Digital Publishing Institute
Subject: Science (General) --- Biology --- Nutrition and Food Sciences
Added to DOAB on : 2020-06-09 16:38:57
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Algae have been used since ancient times as food for humans, animal feed, agricultural fertilizer, and as a source of substances for therapeutic use. Currently, seaweed represents a vast source of raw materials used in the pharmaceutical, food, traditional medicine, and cosmetics industries. They are nutritionally valuable, both fresh and dried, or as ingredients in a wide variety of pre-made foods. In particular, seaweed contains significant amounts of protein, lipids, minerals, and vitamins. Information is limited on the role of algae and their metabolites in therapy. Only a few taxa have been studied for use in medicine. Many traditional cultures report the healing powers of selected algae in tropical and subtropical marine forms. This is especially true in the maritime areas of Asia, where the sea plays a significant role in daily activities. However, currently, only a few genera and species of algae are involved in aspects of medicine and therapy. The beneficial uses of seaweed or seaweed products include those that can mimic specific manifestations of human disease, production of antibiotic compounds, or improved human nutrition.

Molecular Advances in Wheat and Barley

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ISBN: 9783039213719 9783039213726 Year: Pages: 290 DOI: 10.3390/books978-3-03921-372-6 Language: English
Publisher: MDPI - Multidisciplinary Digital Publishing Institute
Subject: Science (General) --- Biology
Added to DOAB on : 2019-12-09 11:49:15
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Allohexaploid bread wheat and diploid barley are two of the most cultivated crops in the world. This book reports novel research and reviews concerning the use of modern technologies to understand the molecular bases for wheat and barley improvement. The contributions published in this book illustrate research advances in wheat and barley knowledge using modern molecular techniques. These molecular approaches cover genomic, transcriptomic, proteomic, and phenomic levels, together with new tools for gene identification and the development of novel molecular markers. Overall, the contributions for this book lead to a further understanding of regulatory systems in order to improve wheat and barley performance.

Keywords

Triticum durum --- Aegilops tauschii --- Triticum aestivum --- marker-trait associations --- genes --- bread wheat --- genetic biofortification --- favorable alleles --- allohexaploid --- homoeolog --- hybrid necrosis --- molecular marker --- wheat --- wheat --- rye --- 6R --- small segment translocation --- powdery mildew --- transgenic wheat --- 12-oxophytodienoate reductase --- jasmonates --- freezing tolerance --- HIGS --- transgene --- wheat --- barley --- cereal cyst nematodes --- wheat --- barely --- breeding --- biotechnology --- resistance --- Triticum aestivum --- Landrace --- Powdery mildew --- Bulked segregant analysis-RNA-Seq (BSR-Seq) --- Single nucleotide polymorphism (SNP) --- Kompetitive Allele Specific PCR (KASP) --- Blumeria graminis f. sp. tritici --- protein two-dimensional electrophoresis --- mass spectrometry --- Pm40 --- Barley --- Grain development --- Transcriptional dynamics --- RNA editing --- RNA-seq --- durum wheat --- Tunisian landraces --- center of diversity --- genetic diversity --- population structure --- DArTseq technology --- chromatin --- 3D-FISH --- nucleus --- introgression --- rye --- hybrid --- wheat --- genome stability --- wheat --- Thinopyrum --- chromosome --- ND-FISH --- oligo probe --- barley --- wheat --- protease --- germination --- grain --- abiotic stress --- antioxidant enzymes --- aquaporin --- TdPIP2 --- 1 --- histochemical analysis --- transgenic wheat --- transpiration --- wheat --- Aegilops tauschii --- Lr42 --- disease resistance --- molecular mapping --- KASP markers --- marker-assisted selection --- phytase --- wheat --- barley --- purple acid phosphatase phytase --- PAPhy --- mature grain phytase activity (MGPA) --- genome assembly --- bread wheat --- barley --- optical mapping --- BAC --- ribosomal DNA --- cereals --- CRISPR --- crops --- genetic engineering --- genome editing --- plant --- Triticeae --- n/a

Molecular Research of Endometrial Pathophysiology

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ISBN: 9783039214952 9783039214969 Year: Pages: 378 DOI: 10.3390/books978-3-03921-496-9 Language: English
Publisher: MDPI - Multidisciplinary Digital Publishing Institute
Subject: Social Sciences --- Sociology
Added to DOAB on : 2019-12-09 16:10:12
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The endometrium has been the subject of intense research in a variety of clinical settings, because of its importance in the reproductive process and its role in women’s health. In the past 15 years, significant efforts have been invested in defining the molecular phenotype of the receptive phase endometrium as well as of various endometrial pathologies. Although this has generated a wealth of information on the molecular landscape of human endometrium, there is a need to complement this information in light of the novel methodologies and innovative technical approaches. The focus of this International Journal of Molecular Sciences Special Issue is on molecular and cellular mechanisms of endometrium and endometrium-related disorders. The progress made in the molecular actions of steroids, in the metabolism of steroids and intracrinology, in endometrial intracellular pathways, in stem cells biology, as well as in the molecular alterations underlying endometrium-related pathologies has been the focus of the reviews and papers included.

Keywords

RANK --- endometrium --- endometrial cancer --- prognosis --- immunohistochemistry --- gene expression --- endometriosis --- developmental pathway --- pathogenomics --- mesenchymal stem cells --- endometrial cancer --- mtDNA mutations --- deficit of complex I --- antioxidant response --- mitochondrial biogenesis --- mitochondrial dynamics --- mitophagy --- miRNA --- lncRNAs --- endometrial cancer --- endometriosis --- chronic endometritis --- cell contacts --- tight junction --- adherens junction --- gap junction --- endometrium --- implantation --- decidualization --- endometriosis --- endometrial cancer --- liquid biopsy --- uterine aspirate --- circulating tumour cells (CTCs) --- circulating tumour DNA (ctDNA) --- exosomes --- Vitamin D --- endometrium --- endometrial cancer --- endometrial cancer --- preclinical models --- translational research --- endometrial cancer --- type II endometrial carcinoma --- targeted therapy --- kinase inhibitor --- molecular marker --- protein kinase --- protein phosphatase --- PP2A --- PPP2R1A --- SMAP --- endometriosis --- infertility --- niche --- inflammation --- immunomodulation --- mesenchymal stem cell --- orthoxenograft --- uterine cancer --- avatar --- murine models --- personalized medicine --- targeted therapy --- preclinical studies --- translational research --- endometriosis --- TRP channels --- endometrial stromal cells --- eutopic and ectopic endometrium --- endometrial cell --- pathway --- proliferation --- decidualization --- migration --- angiogenesis --- regeneration --- breakdown --- implantation --- endometrial cancer --- orthotopic xenograft model --- estrogen dependent --- bioluminescence imaging --- contrast-enhanced CT scan --- endometrium --- adult stem cells --- endometrial regeneration --- stem cell markers --- endometriosis --- endometrial cancer --- decidualisation --- oestradiol --- aromatase --- testosterone --- dehydroepiandrosterone (DHEA) --- endometriosis --- endometrial cancer --- sulfatase --- endometriosis --- ectopic stroma --- microRNA --- small RNA sequencing --- EDN1 --- HOXA10 --- miR-139-5p --- miR-375 --- CTCF --- tumour suppressor gene --- haploinsufficiency --- zinc finger --- CRISPR/Cas9 --- cancer --- endometrial cancer --- gene editing --- phosphoinositide 3-kinase --- PIK3CA --- PIK3CB --- p110? --- p110? --- endometrial cancer --- LGR5 --- endometrium --- endometriosis --- menstrual cycle --- macrophages

Cow's Milk and Allergy

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ISBN: 9783039280285 9783039280292 Year: Pages: 232 DOI: 10.3390/books978-3-03928-029-2 Language: English
Publisher: MDPI - Multidisciplinary Digital Publishing Institute
Subject: Nutrition and Food Sciences --- Biology --- Science (General)
Added to DOAB on : 2020-01-30 16:39:46
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The purpose of this Special Issue “Cow’s Milk and Allergy” is to provide an overview of the association of cow’s milk with allergy. This topic has two quite different faces. On the one hand, we are all aware of the importance of cow’s milk allergy in early life. What is less known is that the consumption of raw, unprocessed milk is associated with a lower incidence of asthma and rhinitis. This Special Issue takes a closer look at all of these aspects of cow’s milk and allergy and focus on the following questions:

Keywords

allergic march --- cow’s milk allergy --- genome-wide association --- polygenic risk score --- food allergy --- cow’s milk --- camel milk --- infant formula --- animal models --- raw milk --- allergy --- asthma --- protection --- cow’s milk allergy --- casein --- cell-mediated reactions --- delayed-type hypersensitivity --- extracellular vesicles --- miRNA-150 --- cow’s milk allergy --- epidemiology --- natural history --- prevalence --- Cow’s milk allergy (CMA), anaphylaxis --- sensitization pattern --- cow’s milk allergens --- CAP-FEIA (Fluorescence Enzyme Immunoassay) --- multiplex dot test --- basophil activation test (BAT), human breast milk --- cow’s milk allergy --- immune system --- dietary intervention --- bioactive peptides --- gut microbiota --- prebiotics --- probiotics --- aggregation --- allergenicity --- ?-lactoglobulin --- CML --- glycation --- sRAGE --- IgE binding --- partial hydrolysate --- cow’s milk protein allergy --- hydrolysate --- infant feeding --- Middle-East --- step-down --- infant allergy --- cow’s milk allergy --- cow’s milk allergens --- diagnosis of cow’s milk allergy --- molecular diagnosis --- treatment of cow’s milk allergy --- prevention of cow’s milk allergy --- alkaline phosphatase --- allergic diseases --- food allergy --- immune regulation --- milk processing --- raw cow’s milk --- milk allergen --- baked milk --- cow’s milk --- allergenicity modulation --- proteomics --- epigenetics --- farming effect --- food allergy --- histone acetylation --- milk processing --- raw milk --- cow’s milk allergy --- milk --- hydrolysate --- asthma --- processing --- tolerance --- allergy --- cow’s milk --- formula --- therapy --- immune cells --- Immunoglubuline E

Plant Protein and Proteome Altlas--Integrated Omics Analyses of Plants under Abiotic Stresses

Authors: --- --- --- --- et al.
ISBN: 9783039219605 / 9783039219612 Year: Pages: 558 DOI: 10.3390/books978-3-03921-961-2 Language: eng
Publisher: MDPI - Multidisciplinary Digital Publishing Institute
Subject: Science (General) --- Biology --- Botany
Added to DOAB on : 2020-06-09 16:38:57
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Integrative omics of plants in response to stress conditions play more crucial roles in the post-genomic era. High-quality genomic data provide more deeper understanding of how plants to survive under environmental stresses. This book is focused on concluding the recent progress in the Protein and Proteome Atlas in plants under different stresses. It covers various aspects of plant protein ranging from agricultural proteomics, structure and function of proteins, and approaches for protein identification and quantification.

Keywords

proteomic --- postharvest freshness --- ATP synthase --- ATP synthase CF1 alpha subunit (chloroplast) --- chlorophyll fluorescence parameters --- photosynthetic parameters --- drought stress --- Triticum aestivum L. --- comparative proteomic analysis --- iTRAQ --- VIGS --- Jatropha curcas --- phosphoproteomics --- seedling --- chilling stress --- regulated mechanism --- Alternanthera philoxeroides --- proteomic --- stem --- potassium --- stress --- Salinity stress --- Dunaliella salina --- isobaric tags for relative and absolute quantitation --- differentially abundant proteins --- proteomics --- arbuscular mycorrhizal fungi --- salt stress --- E. angustifolia --- proteomics --- wheat --- root --- wood vinegar --- drought stress --- ROS --- ABA --- proteome --- maize --- AGPase --- phosphorylation --- brittle-2 --- phos-tagTM --- MIPS --- exon-intron structure diversity --- Gossypium hirsutum --- loss-of-function mutant --- root cell elongation --- CHA-SQ-1 --- cytomorphology --- pollen abortion --- proteomics --- wheat --- cotton --- somatic embryogenesis --- transdifferentiation --- quantitative proteomics --- regulation and metabolism --- molecular basis --- concerted network --- maize --- phosphoproteomics --- salt tolerance --- label-free quantification --- root and shoot --- sugar beet --- salt stress --- S-adenosylmethionine decarboxylase --- ROS --- antioxidant enzyme --- cotton --- somatic embryogenesis --- transdifferentiation --- widely targeted metabolomics --- purine metabolism --- flavonoid biosynthesis --- molecular and biochemical basis --- transcript-metabolite network --- leaf sheath --- maturation --- transcriptional dynamics --- transcriptome --- abiotic stress --- silicate limitation --- diatom --- iTRAQ --- proteomics --- photosynthesis --- carbon fixation --- natural rubber biosynthesis --- mass spectrometry --- rubber grass --- rubber latex --- shotgun proteomics --- Taraxacum kok-saghyz --- two-dimensional gel electrophoresis --- visual proteome map --- proteomics --- wheat --- drought --- leaf --- iTRAQ --- micro-exons --- constitutive splicing --- alternative splicing --- ancient genes --- domain --- radish --- heat stress --- transcriptome sequencing --- lncRNA --- miRNA --- physiological response --- Millettia pinnata --- woody oilseed plants --- seed development --- miRNA --- nitrogen fertilizer --- rice --- proteome --- cultivars --- nitrogen use efficiency (NUE) --- Nelumbo nucifera --- phylogeny --- genomics --- molecular mechanisms --- model plant --- proteomes --- iTRAQ --- filling kernel --- drought stress --- heat shock proteins --- Zea mays L. --- wucai --- low-temperature stress --- high-temperature stress --- proteomics --- redox homeostasis --- GLU1 --- glutathione --- heat response --- heat-sensitive spinach variety --- proteomics --- ROS scavenging --- inositol --- phosphatidylinositol --- phosphatase --- stress --- signaling pathway --- integrated omics --- plants under stress --- post-genomics era --- proteome atlas --- quantitative proteomics

Plant Proteomic Research 2.0

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ISBN: 9783039210626 9783039210633 Year: Pages: 594 DOI: 10.3390/books978-3-03921-063-3 Language: English
Publisher: MDPI - Multidisciplinary Digital Publishing Institute
Subject: Science (General) --- Biology --- Plant Sciences
Added to DOAB on : 2019-06-26 08:44:07
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Abstract

Advancements in high-throughput “Omics” techniques have revolutionized plant molecular biology research. Proteomics offers one of the best options for the functional analysis of translated regions of the genome, generating a wealth of detailed information regarding the intrinsic mechanisms of plant stress responses. Various proteomic approaches are being exploited extensively for elucidating master regulator proteins which play key roles in stress perception and signaling, and these approaches largely involve gel-based and gel-free techniques, including both label-based and label-free protein quantification. Furthermore, post-translational modifications, subcellular localization, and protein–protein interactions provide deeper insight into protein molecular function. Their diverse applications contribute to the revelation of new insights into plant molecular responses to various biotic and abiotic stressors.

Keywords

Phalaenopsis --- petal --- pollination --- senescence --- 2-DE --- ROS --- Medicago sativa --- leaf cell wall proteome --- cadmium --- quantitative proteomics --- 2D DIGE --- chloroplast --- elevated CO2 --- heat stress --- nucleotide pyrophosphatase/phosphodiesterase --- (phospho)-proteomics --- photosynthesis --- protein phosphorylation --- 14-3-3 proteins --- Oryza sativa L. --- starch --- sucrose --- N utilization efficiency --- proteomics --- 2D --- protein phosphatase --- rice isogenic line --- SnRK1 --- 14-3-3 --- lettuce --- bolting --- proteome --- high temperature --- iTRAQ --- proteome profiling --- iTRAQ --- differentially abundant proteins (DAPs) --- drought stress --- physiological responses --- Zea mays L. --- GS3 --- ? subunit --- heterotrimeric G protein --- mass spectrometric analysis --- RGG3 --- rice --- western blotting --- Dn1-1 --- ?-subunit --- heterotrimeric G protein --- mass spectrometry analysis --- RGG4 --- rice --- western blotting --- Clematis terniflora DC. --- polyphenol oxidase --- virus induced gene silencing --- photosynthesis --- glycolysis --- Camellia sinensis --- chlorotic mutation --- chlorophyll deficiency --- weakening of carbon metabolism --- iTRAQ --- proteomics --- degradome --- wheat --- cultivar --- protease --- papain-like cysteine protease (PLCP) --- subtilase --- metacaspase --- caspase-like --- wheat leaf rust --- Puccinia recondita --- Stagonospora nodorum --- iTRAQ --- proteomics --- somatic embryogenesis --- pyruvate biosynthesis --- Zea mays --- chlorophylls --- LC-MS-based proteomics --- pea (Pisum sativum L.) --- proteome functional annotation --- proteome map --- seeds --- seed proteomics --- late blight disease --- potato proteomics --- Phytophthora infestans --- Sarpo Mira --- early and late disease stages --- Simmondsia chinensis --- cold stress --- proteomics --- leaf --- iTRAQ --- Ricinus communis L. --- cold stress --- seed imbibition --- iTRAQ --- proteomics --- Morus --- organ --- gel-free/label-free proteomics --- flavonoid --- antioxidant activity --- phosphoproteome --- barley --- seed dormancy --- germination --- imbibition --- after-ripening --- sugarcane --- Sporisorium scitamineum --- smut --- proteomics --- RT-qPCR --- ISR --- holm oak --- Quercus ilex --- 2-DE proteomics --- shotgun proteomics --- non-orthodox seed --- population variability --- stresses responses --- ammonium --- Arabidopsis thaliana --- carbon metabolism --- nitrogen metabolism --- nitrate --- proteomics --- root --- secondary metabolism --- proteomics --- wheat --- silver nanoparticles --- plant pathogenesis responses --- data-independent acquisition --- quantitative proteomics --- Pseudomonas syringae --- sweet potato plants infected by SPFMV --- SPV2 and SPVG --- sweet potato plants non-infected by SPFMV --- SPV2 and SPVG --- co-infection --- transcriptome profiling --- gene ontology --- pathway analysis --- lesion mimic mutant --- leaf spot --- phenylpropanoid biosynthesis --- proteomics --- isobaric tags for relative and absolute quantitation (iTRAQ) --- rice --- affinity chromatography --- ergosterol --- fungal perception --- innate immunity --- pattern recognition receptors --- plasma membrane --- proteomics --- proteomics --- maize --- plant-derived smoke --- shoot --- Solanum tuberosum --- patatin --- seed storage proteins --- vegetative storage proteins --- tuber phosphoproteome --- targeted two-dimensional electrophoresis --- B. acuminata petals --- MALDI-TOF/TOF --- GC-TOF-MS --- qRT-PCR --- differential proteins --- n/a

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