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Towards a molecular classification of colorectal cancer

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Book Series: Frontiers Research Topics ISSN: 16648714 ISBN: 9782889195671 Year: Pages: 62 DOI: 10.3389/978-2-88919-567-1 Language: English
Publisher: Frontiers Media SA
Subject: Oncology --- Medicine (General)
Added to DOAB on : 2016-02-05 17:24:33
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In 2007, Jeremy Jass proposed a molecular classification of colorectal cancer including KRAS, BRAF, Mismatch Repair, CIMP and MGMT Status. Since then, many prognostic and predictive studies have been published on this topic, mainly focusing on one single molecular marker. The aim of the e-book is to summarize the knowledge in 2014 from a multidisciplinary point of view that can potentially be used as a manual by CRC researchers in every field.

Mesothelioma Heterogeneity: Potential Mechanisms

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ISBN: 9783038974734 9783038974741 Year: Pages: 204 DOI: 10.3390/books978-3-03897-474-1 Language: English
Publisher: MDPI - Multidisciplinary Digital Publishing Institute
Subject: Biology --- Oncology
Added to DOAB on : 2019-01-11 11:18:51
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Mesothelioma is a rare aggressive cancer that develops from the mesothelium. Recent molecular analyses have defined four different types of mesothelioma based on gene expression and two major molecularly-defined groups based on prognosis. In this volume, potential mechanisms causing this heterogeneity are explored. The different chapters include heterogeneity learned from experimental animal models in NF2/Hippo pathway signaling, stem cell signaling pathways, the tumor microenvironment, and micro RNA secretome. Novel aspects deserving attention such as the implication of long, non-coding RNA in disease heterogeneity are described. The volume also includes the description of tools useful to address some specific questions such as an assessment of the copy number variations of two tumor suppressors frequently mutated in mesothelioma or an investigation of Macrophage Inhibition Factor signaling in mesothelioma.

Jasmonic Acid Pathway in Plants

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ISBN: 9783039284887 / 9783039284894 Year: Pages: 346 DOI: 10.3390/books978-3-03928-489-4 Language: eng
Publisher: MDPI - Multidisciplinary Digital Publishing Institute
Subject: Science (General) --- Biology --- Plant Sciences
Added to DOAB on : 2020-06-09 16:38:57
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The plant hormone jasmonic acid (JA) and its derivative, an amino acid conjugate of JA (jasmonoyl isoleucine, JA-Ile), are signaling compounds involved in the regulation of defense and development in plants. The number of articles studying on JA has dramatically increased since the 1990s. JA is recognized as a stress hormone that regulates the plant response to biotic stresses such as herbivore and pathogen attacks, as well as abiotic stresses such as wounding and ultraviolet radiation. Recent studies have remarkably progressed the understanding of the importance of JA in the life cycle of plants. JA is directly involved in many physiological processes, including stamen growth, senescence, and root growth. JA regulates production of various metabolites such as phytoalexins and terpenoids. Many regulatory proteins involved in JA signaling have been identified by screening for Arabidopsis mutants. However, much more remains to be learned about JA signaling in other plant species. This Special Issue, “Jasmonic Acid Pathway in Plants”, contains 5 review and 15 research articles published by field experts. These articles will help with understanding the crucial roles of JA in its response to the several environmental stresses and development in plants.

Keywords

albino --- aroma --- Camellia sinensis --- chloroplast --- jasmonic acid --- light-sensitive --- stress --- tea --- volatile --- Panax ginseng --- gene expression --- ginsenoside --- methyl jasmonate --- MYB transcription factor --- dammarenediol synthase --- jasmonic acid --- signaling pathway --- environmental response --- biological function --- MeJA --- priming --- rice --- proteomics --- ROS --- chlorophyll fluorescence imaging --- MAP kinase --- jasmonate --- rice bacterial blight --- salicylic acid --- grain development --- Prunus avium --- Tuscan varieties --- jasmonic acid --- lipoxygenase --- bioinformatics --- gene expression --- heterotrimeric G proteins --- AtRGS1 --- jasmonates --- endocytosis --- diffusion dynamics --- Chinese flowering cabbage --- leaf senescence --- JA --- transcriptional activation --- adventitious rooting --- auxin --- ectopic metaxylem --- ectopic protoxylem --- ethylene --- hypocotyl --- jasmonates --- nitric oxide --- xylogenesis --- transcriptional regulators --- plant development --- jasmonic acid signaling --- gene expression --- Jasmonate-ZIM domain --- JAZ repressors --- Jas domain --- TIFY --- degron --- phylogenetic analysis --- ancestral sequences --- circadian clock --- jasmonic acid --- crosstalk --- jasmonic acid --- fatty acid desaturase --- multiseeded --- msd --- grain number --- MutMap --- sorghum --- Ralstonia solanacearum --- type III effector --- jasmonic acid --- salicylic acid --- Nicotiana plants --- PatJAZ6 --- jasmonic acid (JA) signaling pathway --- Pogostemon cablin --- patchouli alcohol --- biosynthesis --- jasmonate --- salt response --- Zea mays --- ROS --- proline --- ABA biosynthesis --- jasmonic acid --- crosstalk --- gibberellic acid --- cytokinin --- auxin --- jasmonic acid --- opr3 --- stress defense --- quantitative proteomics --- abiotic stresses --- jasmonates --- JA-Ile --- JAZ repressors --- transcription factor --- signaling --- antioxidant enzyme activity --- elicitor --- methyl jasmonate --- secondary metabolite --- signal molecules --- n/a

Physiological Responses to Abiotic and Biotic Stress in Forest Trees

Authors: ---
ISBN: 9783039215140 9783039215157 Year: Pages: 294 DOI: 10.3390/books978-3-03921-515-7 Language: English
Publisher: MDPI - Multidisciplinary Digital Publishing Institute
Subject: Technology (General) --- General and Civil Engineering --- Environmental Engineering
Added to DOAB on : 2019-12-09 11:49:15
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As sessile organisms, plants have to cope with a multitude of natural and anthropogenic forms of stress in their environment. Due to their longevity, this is of particular significance for trees. As a consequence, trees develop an orchestra of resilience and resistance mechanisms to biotic and abiotic stresses in order to support their growth and development in a constantly changing atmospheric and pedospheric environment. The objective of this Special Issue of Forests is to summarize state-of-art knowledge and report the current progress on the processes that determine the resilience and resistance of trees from different zonobiomes as well as all forms of biotic and abiotic stress from the molecular to the whole tree level.

Keywords

drought --- mid-term --- non-structural carbohydrate --- soluble sugar --- starch --- Pinus massoniana --- salinity --- Carpinus betulus --- morphological indices --- gas exchange --- osmotic adjustment substances --- antioxidant enzyme activity --- ion relationships --- Populus simonii Carr. (poplar) --- intrinsic water-use efficiency --- tree rings --- basal area increment --- long-term drought --- hydrophilic polymers --- Stockosorb --- Luquasorb --- Konjac glucomannan --- photosynthesis --- ion relation --- Fagus sylvatica L. --- Abies alba Mill. --- N nutrition --- mixed stands --- pure stands --- soil N --- water relations --- 24-epiBL application --- salt stress --- ion contents --- chloroplast ultrastructure --- photosynthesis --- Robinia pseudoacacia L. --- elevation gradient --- forest type --- growth --- leaf properties --- Pinus koraiensis Sieb. et Zucc. --- Heterobasidion parviporum --- Heterobasidion annosum --- Norway spruce --- disturbance --- water availability --- pathogen --- infection --- Carpinus turczaninowii --- salinity treatments --- ecophysiology --- photosynthetic responses --- organic osmolytes --- ion homeostasis --- antioxidant enzymes --- glutaredoxin --- subcellular localization --- expression --- tapping panel dryness --- defense response --- rubber tree --- Ca2+ signal --- drought stress --- living cell --- Moso Bamboo (Phyllostachys edulis) --- plasma membrane Ca2+ channels --- signal network --- Aleppo pine --- Greece --- photosynthesis --- water potential --- ?13C --- sap flow --- canopy conductance --- climate --- molecular cloning --- functional analysis --- TCP --- DELLA --- GA-signaling pathway --- Fraxinus mandshurica Rupr. --- wood formation --- abiotic stress --- nutrition --- gene regulation --- tree --- bamboo forest --- cold stress --- physiological response --- silicon fertilization --- plant tolerance --- reactive oxygen species --- antioxidant activity --- proline --- Populus euphratica --- salt stress --- salicylic acid --- malondialdehyde --- differentially expressed genes --- n/a

Marine Bioactive Peptides: Structure, Function, and Therapeutic Potential

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ISBN: 9783039215324 9783039215331 Year: Pages: 442 DOI: 10.3390/books978-3-03921-533-1 Language: English
Publisher: MDPI - Multidisciplinary Digital Publishing Institute
Subject: Science (General) --- Biology
Added to DOAB on : 2019-12-09 11:49:16
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This Special Issue Book, “Marine Bioactive Peptides: Structure, Function, andTherapeutic Potential"" includes up-to-date information regarding bioactivepeptides isolated from marine organisms. Marine peptides have been found invarious phyla, and their numbers have grown in recent years. These peptidesare diverse in structure and possess broad-spectrum activities that have greatpotential for medical applications. Various marine peptides are evolutionaryancient molecular factors of innate immunity that play a key role in host defense.A plethora of biological activities, including antibacterial, antifungal, antiviral,anticancer, anticoagulant, endotoxin-binding, immune-modulating, etc., makemarine peptides an attractive molecular basis for drug design. This Special IssueBook presents new results in the isolation, structural elucidation, functionalcharacterization, and therapeutic potential evaluation of peptides found inmarine organisms. Chemical synthesis and biotechnological production of marinepeptides and their mimetics is also a focus of this Special Issue Book.

Keywords

sea cucumber --- ACE-inhibitory peptide --- molecular docking --- structure-activity relationship --- plastein reaction --- Gracilariopsis lemaneiformis --- ACE-inhibitory activity --- peptide --- molecular docking --- SHRs --- prostate cancer --- Anthopleura anjunae oligopeptide --- DU-145 cells --- PI3K/AKT/mTOR signaling pathway --- cod skin --- NA-inhibitory peptide --- influenza virus --- neuraminidase --- molecular docking --- adsorption --- host defense peptide --- antimicrobial peptide --- anti-LPS factor --- host?microbe relationship --- functional diversity --- invertebrate immunity --- crustacean --- antimicrobial activity --- antimicrobial peptide --- polychaeta --- innate immunity --- BRICHOS domain --- recombinant peptide --- ?-helix --- Rana-box --- nuclear magnetic resonance (NMR) --- antimicrobial peptide --- cytotoxicity --- ?-hairpin --- polyphemusins --- tachyplesins --- cell death --- signaling pathways --- Neptunea arthritica cumingii --- multi-functional peptides --- antioxidant activity --- ACE-inhibitory activity --- anti-diabetic activity --- Arenicola marina --- antimicrobial peptides --- arenicin --- complement --- C3a --- acid-sensing ion channel --- animal models --- pain relief --- toxin --- Ugr 9-1 --- APETx2 --- hairtail (Trichiurus japonicas) --- muscle --- peptide --- antioxidant activity --- half-fin anchovy hydrolysates --- Maillard reaction products --- antibacterial peptide --- identification --- self-production of hydrogen peroxide --- membrane damage --- Perinereis aibuhitensis --- decapeptide --- lung cancer --- cell proliferation --- apoptosis --- conotoxins --- conopeptides --- computational studies --- molecular dynamics --- machine learning --- docking --- review --- drug design --- ion channels --- Conus --- conotoxin --- transcriptome sequencing --- phylogeny --- venom duct --- abalone --- peptide --- vasculogenic mimicry --- metastasis --- MMPs --- HIF-1? --- dexamethasone --- myotube atrophy --- protein synthesis --- proteolytic system --- Pyropia yezoensis peptide --- PYP15 --- QAGLSPVR --- antihypertensive effect --- Caco-2 cell monolayer --- transport routes --- oyster zinc-binding peptide --- peptide-zinc complex --- caco-2 cells --- intestinal absorption --- zinc bioavailability --- Chlorella pyrenoidosa protein hydrolysate (CPPH) --- Chlorella pyrenoidosa protein hydrolysate-calcium chelate (CPPH-Ca) --- calcium absorption --- gene expression --- gut microbiota --- cone snails --- conotoxins --- ion channels --- function --- structure --- marine peptides --- arenicin-1 --- molecular symmetry --- structure–activity relationship --- antibacterial --- cytotoxic --- chemical synthesis --- molecular dynamics --- tilapia --- HUVEC --- angiotensin II --- NF-?B --- Nrf2 --- endothelial dysfunction --- conotoxin --- cone snail --- Conus --- Conus ateralbus --- Kalloconus --- n/a

Plant Protein and Proteome Altlas--Integrated Omics Analyses of Plants under Abiotic Stresses

Authors: --- --- --- --- et al.
ISBN: 9783039219605 / 9783039219612 Year: Pages: 558 DOI: 10.3390/books978-3-03921-961-2 Language: eng
Publisher: MDPI - Multidisciplinary Digital Publishing Institute
Subject: Science (General) --- Biology --- Botany
Added to DOAB on : 2020-06-09 16:38:57
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Integrative omics of plants in response to stress conditions play more crucial roles in the post-genomic era. High-quality genomic data provide more deeper understanding of how plants to survive under environmental stresses. This book is focused on concluding the recent progress in the Protein and Proteome Atlas in plants under different stresses. It covers various aspects of plant protein ranging from agricultural proteomics, structure and function of proteins, and approaches for protein identification and quantification.

Keywords

proteomic --- postharvest freshness --- ATP synthase --- ATP synthase CF1 alpha subunit (chloroplast) --- chlorophyll fluorescence parameters --- photosynthetic parameters --- drought stress --- Triticum aestivum L. --- comparative proteomic analysis --- iTRAQ --- VIGS --- Jatropha curcas --- phosphoproteomics --- seedling --- chilling stress --- regulated mechanism --- Alternanthera philoxeroides --- proteomic --- stem --- potassium --- stress --- Salinity stress --- Dunaliella salina --- isobaric tags for relative and absolute quantitation --- differentially abundant proteins --- proteomics --- arbuscular mycorrhizal fungi --- salt stress --- E. angustifolia --- proteomics --- wheat --- root --- wood vinegar --- drought stress --- ROS --- ABA --- proteome --- maize --- AGPase --- phosphorylation --- brittle-2 --- phos-tagTM --- MIPS --- exon-intron structure diversity --- Gossypium hirsutum --- loss-of-function mutant --- root cell elongation --- CHA-SQ-1 --- cytomorphology --- pollen abortion --- proteomics --- wheat --- cotton --- somatic embryogenesis --- transdifferentiation --- quantitative proteomics --- regulation and metabolism --- molecular basis --- concerted network --- maize --- phosphoproteomics --- salt tolerance --- label-free quantification --- root and shoot --- sugar beet --- salt stress --- S-adenosylmethionine decarboxylase --- ROS --- antioxidant enzyme --- cotton --- somatic embryogenesis --- transdifferentiation --- widely targeted metabolomics --- purine metabolism --- flavonoid biosynthesis --- molecular and biochemical basis --- transcript-metabolite network --- leaf sheath --- maturation --- transcriptional dynamics --- transcriptome --- abiotic stress --- silicate limitation --- diatom --- iTRAQ --- proteomics --- photosynthesis --- carbon fixation --- natural rubber biosynthesis --- mass spectrometry --- rubber grass --- rubber latex --- shotgun proteomics --- Taraxacum kok-saghyz --- two-dimensional gel electrophoresis --- visual proteome map --- proteomics --- wheat --- drought --- leaf --- iTRAQ --- micro-exons --- constitutive splicing --- alternative splicing --- ancient genes --- domain --- radish --- heat stress --- transcriptome sequencing --- lncRNA --- miRNA --- physiological response --- Millettia pinnata --- woody oilseed plants --- seed development --- miRNA --- nitrogen fertilizer --- rice --- proteome --- cultivars --- nitrogen use efficiency (NUE) --- Nelumbo nucifera --- phylogeny --- genomics --- molecular mechanisms --- model plant --- proteomes --- iTRAQ --- filling kernel --- drought stress --- heat shock proteins --- Zea mays L. --- wucai --- low-temperature stress --- high-temperature stress --- proteomics --- redox homeostasis --- GLU1 --- glutathione --- heat response --- heat-sensitive spinach variety --- proteomics --- ROS scavenging --- inositol --- phosphatidylinositol --- phosphatase --- stress --- signaling pathway --- integrated omics --- plants under stress --- post-genomics era --- proteome atlas --- quantitative proteomics

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